000002956 001__ 2956 000002956 005__ 20250424232805.0 000002956 0247_ $$2DOI$$a10.6083/M49P30MQ 000002956 037__ $$aETD 000002956 245__ $$aEvaluating virtualization and workflow management systems for biomedical applications to increase computational scientific reproducibility 000002956 260__ $$bOregon Health and Science University 000002956 269__ $$a2015 000002956 336__ $$aCapstone 000002956 502__ $$bM.B.I. 000002956 502__ $$gBiomedical Informatics 000002956 520__ $$aSuccess as a biomedical scientist depends on publishing relevant findings to answer a biological question. A scientist needs to publish as frequently as possible in as many prestigious outlets as possible to meet certain requirements set forth by the institution to stay afloat in the hypercompetitive environment for obtaining grant funding. However, publication bias can be detrimental to the reproducibility and replicability of a study. It can also disrupt the self-correcting mechanism of the scientific method. Publication bias can lead to a lack of transparency within the study where an unpublished neutral or negative result could be necessary for another scientist to reproduce and extend the original idea. This bias has contributed to an uncomfortable trend within all scientific communities; that all novel, exciting, and innovative findings deserve more emphasis over reproducibility of the experiments or the methods. 000002956 540__ $$fCC BY 000002956 542__ $$fIn copyright - single owner 000002956 650__ $$aWorkflow$$038890 000002956 650__ $$aUser-Computer Interface$$027668 000002956 650__ $$aBiomedical Engineering$$015574 000002956 650__ $$aReproducibility of Results$$028215 000002956 650__ $$aNegative Results$$012609 000002956 650__ $$aPublishing$$024894 000002956 650__ $$aPublication Bias$$030094 000002956 691__ $$aSchool of Medicine$$041369 000002956 692__ $$aDepartment of Medical Informatics and Clinical Epidemiology$$041422 000002956 7001_ $$aHwee, Jason$$uOregon Health and Science University$$041354 000002956 7201_ $$aMcWeeney, Shannon$$uOregon Health and Science University$$041354$$7Personal$$eAdvisor 000002956 8564_ $$97fb2e70d-2ba9-43f8-9ed1-189a8b4eeacc$$s59318$$uhttps://digitalcollections.ohsu.edu/record/2956/files/3730_etd.pdf$$ePublic$$22003db9bf35c1f205d517770f34fa511$$31 000002956 905__ $$a/rest/prod/5h/73/pw/32/5h73pw32f 000002956 909CO $$ooai:digitalcollections.ohsu.edu:2956$$pstudent-work 000002956 980__ $$aBiomedical Informatics