000000322 001__ 322 000000322 005__ 20250312090209.0 000000322 0247_ $$2DOI$$a10.6083/M48050KT 000000322 037__ $$aETD 000000322 245__ $$aAutomatic summarization of mouse gene information for microarray analysis by functional gene clustering and ranking of sentences in MEDLINE abstracts 000000322 260__ $$bOregon Health and Science University 000000322 269__ $$a2007 000000322 336__ $$aDissertation 000000322 502__ $$bPh.D. 000000322 502__ $$gBiomedical Informatics 000000322 520__ $$aWith the increasing volume of published online full-text scientific articles, even the most robust Information Retrieval (IR) system returns more documents and abstracts than biomedical scientists are able to manually review. The problem is aggravated by the information-intensive nature of “high-throughput” technologies (e.g., microarray experiments) that can study expression in a given biologic context at a genome-wide scale. These advanced technologies and the increasing number of publications discussing genomic findings impair our ability to fully comprehend the meaning of the information that is embedded in the vast body of free-text biomedical literature. As such, the ability to use the literature to interpret the results of the experiments at hand is limited. Hence, tools that can survey the large quantity of literature can be helpful to the scientists interpreting and planning these large-scale genome-wide microarray experiments. 000000322 540__ $$fCC BY 000000322 542__ $$fIn copyright - single owner 000000322 650__ $$aCluster Analysis$$028809 000000322 650__ $$aMEDLINE$$028990 000000322 650__ $$aNatural Language Processing$$022716 000000322 650__ $$aInformation Storage and Retrieval$$028998 000000322 650__ $$aMicroarray Analysis$$035790 000000322 691__ $$aSchool of Medicine$$041369 000000322 692__ $$aDepartment of Medical Informatics and Clinical Epidemiology$$041422 000000322 7001_ $$aYang, Jianji$$uOregon Health and Science University$$041354 000000322 7201_ $$aHersh, William$$uOregon Health and Science University$$041354$$7Personal$$eAdvisor 000000322 8564_ $$99e1c8d9e-088e-4693-9982-f136db6e1e64$$s2433598$$uhttps://digitalcollections.ohsu.edu/record/322/files/323_etd.pdf 000000322 905__ $$a/rest/prod/f1/88/1k/90/f1881k909 000000322 909CO $$ooai:digitalcollections.ohsu.edu:322$$pstudent-work 000000322 980__ $$aBiomedical Informatics