TY  - GEN
N2  - Here we evaluated the accuracy of several freely available software packages to correct for variable gene copy numbers in microbiome profiling using the 16S rRNA gene. We then applied these corrections to a published urinary microbiome dataset to show that the use of one of these packages has a measurable effect on the final results of human urinary microbiome studies.
DO  - 10.6083/bpxhc43710
DO  - doi
AB  - Here we evaluated the accuracy of several freely available software packages to correct for variable gene copy numbers in microbiome profiling using the 16S rRNA gene. We then applied these corrections to a published urinary microbiome dataset to show that the use of one of these packages has a measurable effect on the final results of human urinary microbiome studies.
AD  - Oregon Health and Science University
AD  - Oregon Health and Science University
T1  - Evaluation of currently available 16S rRNA gene copy number correction software packages for accuracy and impact in a mock microbial community and urinary microbiome dataset
DA  - 2024-06-21
AU  - Shah, Rebecca
AU  - Karstens, Lisa
L1  - https://digitalcollections.ohsu.edu/record/43710/files/Shah.Karstens.2024.pdf
PB  - Oregon Health and Science University
LA  - eng
PY  - 2024-06-21
ID  - 43710
L4  - https://digitalcollections.ohsu.edu/record/43710/files/Shah.Karstens.2024.pdf
KW  - RNA, Ribosomal, 16S
KW  - Genes, rRNA
KW  - Microbiota
KW  - microbiome profiling
KW  - 16S rRNA
KW  - gene copy number correction
TI  - Evaluation of currently available 16S rRNA gene copy number correction software packages for accuracy and impact in a mock microbial community and urinary microbiome dataset
Y1  - 2024-06-21
L2  - https://digitalcollections.ohsu.edu/record/43710/files/Shah.Karstens.2024.pdf
LK  - https://digitalcollections.ohsu.edu/record/43710/files/Shah.Karstens.2024.pdf
UR  - https://digitalcollections.ohsu.edu/record/43710/files/Shah.Karstens.2024.pdf
ER  -