000000876 001__ 876 000000876 005__ 20250306135933.0 000000876 0247_ $$2DOI$$a10.6083/M4DR2SH4 000000876 037__ $$aETD 000000876 245__ $$aIntegrated signatures of disease using network methods 000000876 260__ $$bOregon Health and Science University 000000876 269__ $$a2012 000000876 336__ $$aDissertation 000000876 502__ $$bPh.D. 000000876 502__ $$gBiomedical Informatics 000000876 520__ $$aCo-expression network models help identify important biochemical pathways, biomarkers, and targets for research, but they typically focus on gene expression. In this work, co-expression network methodologies are extended to proteomics and applied to data derived from mice infected with either influenza or SARS-CoV. This work develops the methods necessary for deriving integrated network signatures of disease with an application in systems biology of infectious disease. 000000876 540__ $$fCC BY 000000876 542__ $$fIn copyright - single owner 000000876 650__ $$aTranscriptome$$039582 000000876 650__ $$aGene Regulatory Networks$$037326 000000876 650__ $$aProteome$$032481 000000876 650__ $$aProtein Interaction Maps$$039690 000000876 650__ $$aProteomics$$035059 000000876 650__ $$aSystems Biology$$036214 000000876 650__ $$aCommunicable Diseases$$016934 000000876 650__ $$aMice$$036842 000000876 650__ $$aInfluenza, Human$$020802 000000876 650__ $$aSevere acute respiratory syndrome-related coronavirus$$035648 000000876 650__ $$aBiomarkers$$028395 000000876 6531_ $$abiochemical markers 000000876 6531_ $$aprotein-protein interaction 000000876 691__ $$aSchool of Medicine$$041369 000000876 692__ $$aDepartment of Medical Informatics and Clinical Epidemiology$$041422 000000876 7001_ $$aGibbs, David$$uOregon Health and Science University$$041354 000000876 7201_ $$aMcWeeney, Shannon$$uOregon Health and Science University$$041354$$7Personal$$eAdvisor$$eMentor 000000876 8564_ $$9f1d0c0fa-820b-468d-b2c5-597634e6e937$$s11153116$$uhttps://digitalcollections.ohsu.edu/record/876/files/879_etd.pdf 000000876 905__ $$a/rest/prod/1v/53/jx/05/1v53jx05d 000000876 909CO $$ooai:digitalcollections.ohsu.edu:876$$pstudent-work 000000876 980__ $$aBiomedical Informatics