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1.
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When filming a movie, capturing the essence of a story goes beyond still shots of key scenes. Imagine trying to understand the plot of a movie by only looking at a single [...]
2023 |
Dissertation |
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2.
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LC8 is a key molecular hub protein involved in a wide array of cellular processes (e.g., apoptosis, viral interactions, signal transduction). LC8 interacts with over 100 [...]
2024 |
Abstract |
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3.
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Most behavior, observed via a subset of coordinates or discretized states, should not be Markovian even though the underlying dynamics generally will be.
2015 |
Article |
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4.
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The basics of trajectories and the different types of trajectory ensembles are explained.
2015 |
Article |
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5.
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6.
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Molecular dynamics simulations often fail to reach timescales characteristic of equilibrium sampling, so great care must be taken in computing and reporting statistical u [...]
2017 |
Article |
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7.
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The trajectory ensemble is fundamental in statistical physics and relatively easy to understand. It is also information-rich, as both equilibrium and non-equilibrium obse [...]
2015 |
Article |
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8.
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9.
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Basic concepts and limitations of path sampling are described.
2016 |
Article |
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10.
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The potential of mean force (PMF) is one of the most widely used characterizations of a biomolecular system computed from simulation, but calculating and interpreting a P [...]
2017 |
Article |
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